Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRCRNCGERPA----SEGHICMVCKRRSDIDPYKALIAMALLVYCGVSLAAYLKPHMPAPPPTAGSSVQPAEELAQRARQATLEQRGI
1VQ8 Chain:Z ((29-62))
--ACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRS------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1555 for 148 contacts (-10.5/contact) +
2D Compatibility (PS) -2945 + (NN) 1131 + (LL) 3496
1D Compatibility (HY) -1200 + (ID) 450
Total energy: -1523.0 ( -10.29 by residue)
QMean score : 0.307
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ8-query.scw
PDB file :
Tito_Scwrl_1VQ8.pdb
: