Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATQGVFTLPANTRFGVTAFANSSGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG
1W8F Chain:C ((2-115))
-ATQGVFTLPANTRFGVTAFANSSGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG
General information:
TITO was launched using:
RESULT:
Template:
1W8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46424 for 851 contacts (-54.6/contact) +
2D Compatibility (PS) -13177 + (NN) -12019 + (LL) 208
1D Compatibility (HY) -14000 + (ID) 5700
Total energy: -91112.0 ( -107.06 by residue)
QMean score : 0.689
(partial model without unconserved sides chains):
PDB file :
Tito_1W8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W8F-query.scw
PDB file :
Tito_Scwrl_1W8F.pdb
: