Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNLIEVRDLSKTFTLHQQQGVVLNVLRGLNFNVAGGECLVLHGRSGAGKSTLLRTLYGNYLPA--GGSIRLRHAGDWLELVGAEPREVLAVRRQTLGYVSQFLRVIPRVATLD-VVMEPALARGWSRDSAELRARSLLARLNIPERLWQLAPGTFSGGEQQRVNIARGFMVEWPILLLDEPTASLDEANRQVVLELIGEAKAAGAALIGIFHDRAAREAVASRYLDMSQELSRQEQAHVV
3C41 Chain:K ((3-212))
---MIDVHQLKKSFG-------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDEGEIII----DGINLKAKDTN--LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDK-AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMD------------
General information:
TITO was launched using:
RESULT:
Template:
3C41.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125793 for 1630 contacts (-77.2/contact) +
2D Compatibility (PS) -21981 + (NN) -6197 + (LL) 2544
1D Compatibility (HY) -18800 + (ID) 3600
Total energy: -173827.0 ( -106.64 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_3C41.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C41-query.scw
PDB file :
Tito_Scwrl_3C41.pdb
: