Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQNSLLDGRRVLLTGGARGLGYAFAEAAARAGARVVIADILEERVQRSARELAEQGLDISGLPLDLADPVSIERCVAAAVERLGGLDGLVNNASITNSGGKSCEELEIEVFDRVLQVNVRGTWLMTRACLPALRESGRGAVVNLASDTPLWGAPNLLAYSASKGALIAMTRSLARELGGDGITVNAIAPGLVEVEATEYVPAARHRLYREQRALQRGQQPADVCGAVLFALSDLSRFITGQTLPVNGGFVMP
1NFQ Chain:D ((5-239))
------LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVH---LDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIG--TIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVP---EDIF--QTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTV--
General information:
TITO was launched using:
RESULT:
Template:
1NFQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162899 for 2044 contacts (-79.7/contact) +
2D Compatibility (PS) -25319 + (NN) -8202 + (LL) 784
1D Compatibility (HY) -16800 + (ID) 4700
Total energy: -217136.0 ( -106.23 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_1NFQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NFQ-query.scw
PDB file :
Tito_Scwrl_1NFQ.pdb
: