Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLYRAAIHQLFLALDLPTPNDEESVLSLQVGPHLCHLAEHPTDHLL-MFTRLEGQGD--ATANEQNLFSQDPCKPILGRDPESGERLLWNRQPLQLLDRAQIHHQLEQLVAAAEELR
1JYA Chain:A ((2-118))
--YSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQ
General information:
TITO was launched using:
RESULT:
Template:
1JYA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27865 for 703 contacts (-39.6/contact) +
2D Compatibility (PS) -12311 + (NN) -10671 + (LL) 128
1D Compatibility (HY) -3600 + (ID) 1100
Total energy: -55419.0 ( -78.83 by residue)
QMean score : 0.203
(partial model without unconserved sides chains):
PDB file :
Tito_1JYA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JYA-query.scw
PDB file :
Tito_Scwrl_1JYA.pdb
: