Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKGNVLIMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKAGLPLHLIQVSGLRGK-----------GLKSLVKAPL-------E---LLKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQNAV--AGTA---NRSLAP-----I-------------------------ARRVCEAFPDTFPASD---K--RLTTGNPVRGELFLDAHARAPL-TGRRVNLLVLGGSLGA-EPLNKLLPEALAQVPLEIRPAIRHQAGRQHAEITAERYRTVAVEADVAPFISDMAAAYAWADLVICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLAKPEATRTVVDACLEVARG |
| 3WAD Chain:A ((1-414)) | --MRVLMTVFANRSHLYNMVPLAWALTTAGHEVHIASHPD--NVQAISDSGLTAVPVGNDLNIMAALTLNETRPEKLTWQYIHDVFAQYSQIYEYMADSTMTADLVAHARQWQPDLVIWDALTY--AGPIAAEAVGAPHVRMLFGLDQWGRMRDHFNRLTGERAADDRHDPLADWLATKGEPHGVAFTESLVTGTTTLAVAPPWMSFPSEQPALSMRHLPFNGPAVL----PDWLREAPSRPRVCLTLGLTLREL---NVTLADFVNAVAD-IDADVVATFSAEQVAEIGD----LPDNVRAVDFVPL-HALLPSCAAIVHHGGGGTRTNAIRYGVPQLIVPNW---LWDEGYVAERFAERGAALVTEVPDLTPDRLRDQLRRLIAEPSFKAAAEQIQKEYDALPSLTETVGELVRVAE- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3WAD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -181281 for 2782 contacts (-65.2/contact) +
2D Compatibility (PS) -36188 + (NN) -14952 + (LL) 1576
1D Compatibility (HY) -2400 + (ID) 2650
Total energy: -235895.0 ( -84.79 by residue)
QMean score : 0.481
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