Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRLEQILTPGRSLVNVPGGSKKRVLEQIANLVARELPEFDAQTIFENLVAREKLGSTGF---GNGIAIPHCRLSGCQSPISAVLHLDAPVDFDALDG----APVDLLFVLLVPEAATEEHLELLRQIAAMLDRADVRDRLRSAPTAEALYQIVVDVQNGQ
1XIZ Chain:A ((-1-153))
-AMQDIHFRRHYVRHLPKEVSQNDIIKALASPLIND--GMVVSDFADHVITREQNFPTGLPVEPVGVAIPHTDHKYVRQNAISVGILAEPVNFEDMGGEPDPVPVRVVFMLALGE--SNKQLNVLGWIMDVIQDEDFMQQLLVMNDDEIYQSIYTRISE--
General information:
TITO was launched using:
RESULT:
Template:
1XIZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75587 for 1141 contacts (-66.2/contact) +
2D Compatibility (PS) -16648 + (NN) -10406 + (LL) 480
1D Compatibility (HY) -8400 + (ID) 1450
Total energy: -112011.0 ( -98.17 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_1XIZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XIZ-query.scw
PDB file :
Tito_Scwrl_1XIZ.pdb
: