Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLPSGDQPAEPGNA
4J6W Chain:C ((5-70))
----HSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRL------------
General information:
TITO was launched using:
RESULT:
Template:
4J6W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46486 for 411 contacts (-113.1/contact) +
2D Compatibility (PS) -7329 + (NN) -2088 + (LL) -364
1D Compatibility (HY) -11200 + (ID) 3300
Total energy: -70767.0 ( -172.18 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_4J6W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J6W-query.scw
PDB file :
Tito_Scwrl_4J6W.pdb
: