Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVLIVHAHNEPQSFTRALCDQACETLAGQGHAVQVSDLYAMNWNPVASAADFAER-ADPDYLVYALEQRESVKRQSLAADIQAELDKLLWADLLILNFPIYWFSVPAILKGWFDRVLVSGVCYGGKRFYDQGGLAGKKALVSLTLGGRQHMFGEGAIHGPLEDMLRPILRGTLAYVGMQVLEPFVAWHVPYISEEARGNFLRAYRARLENLEQDVPLRFPRLEQFDALLQPLAR
3OVM Chain:B ((5-221))
-KVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPI-----------------
General information:
TITO was launched using:
RESULT:
Template:
3OVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170742 for 1661 contacts (-102.8/contact) +
2D Compatibility (PS) -22933 + (NN) -8016 + (LL) 1752
1D Compatibility (HY) -22000 + (ID) 4700
Total energy: -226639.0 ( -136.45 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_3OVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OVM-query.scw
PDB file :
Tito_Scwrl_3OVM.pdb
: