Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATAPRPLREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDIQG--GEVIGLVVSSSCDYFAPVAFPQRIEMGLRVARLGNSSVQYELALFLEGQREACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSSAQ
2GF6 Chain:A ((3-134))
---------ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPIVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLK--DGELTTEGYVIQIAINPKIWKSTEMPKEIMDKLSI------
General information:
TITO was launched using:
RESULT:
Template:
2GF6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84946 for 918 contacts (-92.5/contact) +
2D Compatibility (PS) -13807 + (NN) -2160 + (LL) 1080
1D Compatibility (HY) -8000 + (ID) 1250
Total energy: -109083.0 ( -118.83 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_2GF6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GF6-query.scw
PDB file :
Tito_Scwrl_2GF6.pdb
: