Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQATCARIARRFVWRNRMPRRLFIGLFLLPLPLFAAPPKDELAYAVGARLGMRLQQEMPGLELSELLLGLRQAYRGEALEIPPERIEQLLLQHENATTETPRTTPAEARFLANEKARFGVRELTGGVLVSELRRGQG---NGIGAATQVHVRYRGLL-ADGQVFDQSESAE-----WFALDSVIEGWRTALRAMPVGARWRVVIPSAQAYGHEGAGDLIPPDAPLVFEIDLLGFR
3IHZ Chain:B ((15-125))
-----------------------------------------------------------------------------------------------------------------------------GGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISFR
General information:
TITO was launched using:
RESULT:
Template:
3IHZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73769 for 730 contacts (-101.1/contact) +
2D Compatibility (PS) -11287 + (NN) -4763 + (LL) 10704
1D Compatibility (HY) -7600 + (ID) 1950
Total energy: -88665.0 ( -121.46 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_3IHZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IHZ-query.scw
PDB file :
Tito_Scwrl_3IHZ.pdb
: