Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------------------------MITFLPIIFSILIVV-----TFVIGN----FAN--------GFIALVNSIEWFKRQKISFADQILTALAVSRVGLLW---VLVLNWYATELNPAFNSIEVRITAYNVWAVI----NHFSNWLATSLS---IFYLLKIANFSNLIFLHLKRRVKSVVLVILLGPLLFLVCHLFVINMNQIIW---------TKEYEGNMTWKIKLRSAMYLSNTTVTILANLVPFTLTLISFLLL----------------ICSLCKHLKKM------------QLHGKGSQDPSMKVHIKALQTVTSFLLLCAI-------YFLSI------IMSVWSFESLENKPVFMFCEAIAFSYPSTHPFILIWGNKKLKQTFLSVLWHVRYWVKGEKPSSS--------- |
| 4C1N Chain:A ((1-442)) | GLTGLEIYKHLPKKNCKECGQPTCLAFAMQIAAGKAGLDACPYVSDEAKELLESASAPPVALIKVGKGEKVLEIGHETVLFRHDKRFEHPCGLAILVEDT--LSEGEIKERVEKINKLVFDRVGQMHSVNLVALKGSSQDAATFAKAVATAREVTDLPFILIGTPEQLAAALETEGANNPLLYAATADNYEQMVELAKKYNVPLTVSAKGLDALAELVQKITALGYKNLILDPQPENISEGLFYQTQIRRLAIKKLFRPFGYPTIAFALDENPYQAVMEASVYIAKYAGIIVLNTVEPADILPLITLRLNIYTDPQKPIAVEPKVYEILNPGPDAPVFITTNFSLTYFCVAGDVEGARIPAYILPVDTDGTSVLTAWAAGKFTPEKIAQFLKESGIAEKVNHRKAILPGGVAVLSGKLQELSGWEILV-GPRESSGINSFIKQRW |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C1N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -308918 for 2220 contacts (-139.2/contact) +
2D Compatibility (PS) -32448 + (NN) -9033 + (LL) 324
1D Compatibility (HY) -8800 + (ID) 2500
Total energy: -361375.0 ( -162.78 by residue)
QMean score : 0.108
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