Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLISIAFLLVLCLLNYSSFRMLKSFLTLKKISRYAYLGFFILLSAGEATFVFYRNVMPSHLFVLTSACSFVSFIAFVFSLSFYGFSYSVEKIDFLPSRRKGLKNFLRIGFYLALLGYFWRGFYEGLARPKIKETPIYLDKLDKELKIILLTDMHVGSLLQKDFVNYIVEEVNQKEVDMVLIGGDLVDENIE--KVKSF----LLPLNNLK--STHGTFYVPGNHEYYHGIEP-I--LS-FLN----TLDMTILGNECVH------L----GGINLCGVYDYFAR-------KRQDFAPDIDKALKKR-DSSKPTILLAHQPKQIR--------------SLKESHSIDLVLSGHTHAGQIFPFSLLVKLAQTYLHGLYKHSGTTQIYVSSGAGYWGIPLRFLAPSEIAYLRLLPKNQA |
| 3TGH Chain:A ((2-240)) | ----------------------------------------------------------------------------------------------------------------------------------------------CQLRFASLGDWGKDTKGQILNAKYFKQFIKNERVTFIVSPGSNFIDGVKGLNDPAWKNLYEDVYSEEKGDMYMPFFTVLGTRDWTGNYNAQLLKGQG---DATNYPKWI-MPNYWYHYFTHFTVSHKDLAAAFIFIDTWVLSSNFPYKKIHEKAWNDLKSQLSVAKKIADFIIVVGDQPIYSSGYSRGSSYLAYYLLPLLKDAEVDLYISGHDNNMEVIEDNDMAHITCGSGSMSQGKSGMKNSKSLFFSSDIGFCVHELSNNGIVTKFVSSKKGE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TGH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -86500 for 1209 contacts (-71.5/contact) +
2D Compatibility (PS) -17919 + (NN) -4490 + (LL) 12528
1D Compatibility (HY) -8000 + (ID) 1200
Total energy: -105581.0 ( -87.33 by residue)
QMean score : 0.364
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