Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVNEVQGIGIPTSHASVQTTPTKEISRTNTINTVDESKTTIDPDQYKPKLELLSERLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPS---KEAVELMQRMRDVIGIIFDKRG
1J3M Chain:A ((75-127))
----------------------------------------------------------------LLPCNVVLREAEEGVEVLIQDPK--EMFRVLPEATQRALAPVAEEARTRLSRALSRL-
General information:
TITO was launched using:
RESULT:
Template:
1J3M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12239 for 245 contacts (-50.0/contact) +
2D Compatibility (PS) -5288 + (NN) -2023 + (LL) 3792
1D Compatibility (HY) -1600 + (ID) 350
Total energy: -17708.0 ( -72.28 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_1J3M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J3M-query.scw
PDB file :
Tito_Scwrl_1J3M.pdb
: