Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSHRLLGRVMLLLGALGVILTMSFSYVAAAEKPNIDKPVKGLEQTEKAIVADDYNKAKDAFQEDKLWWSENKQVVKEKSYDLAGQIDRQIAEISLGILNNDKQQAMDGITSLHNLLKTYQDGTYTDNEGNTNITLSSYIAKLTATKKLVDEKEWAKAATQIQDLKTEWLAVEGDVVSQSQAAYDNTERDLMLLDAYINDPAKQAKTADVLDGMTEELKPFADVTYTWFDAALIPFREGLEALLIIATLLTYTKRTKTRTAKRWIIGGTAAGLVVSLALGMIVAFWLSALAFGDNNNLINGWAGLIASIMMLYVSYWLHRNSDITRWNNYMEGKSNQALSNGKMISFAFLAFLAILREGLETVVFLIGMVGRMSNFELLMGILAGLGVLLIIAFVMLRYSVHIPVKPFFMISSAIVFYLCFKFMGSGIHSLQLAGVIPTSVEDYLPSIPALSIYPSWYSFLPQVLLVIFGLTILIKQQIKKKS |
1SZI Chain:A ((206-431)) | ---------------------------------------NRLPLTEAELALIATPPEDSDMASLQQQRQEQNYFVRLGS--LSERLRNHAYEHSLGKLQNARQKAQETLQQLTSVLGLMESVK-------------------QAKPEQVEARALSMFRDITQQLQSMCVALGASIQG--------------LPSHVREQAQQARSQVNDLQATFSGIHSFQDLSAGVLAQTRERIARAREALDNTVEYVA------QNTPAMWLVGPFAPGITE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SZI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -19885 for 1397 contacts (-14.2/contact) +
2D Compatibility (PS) -20366 + (NN) -2732 + (LL) 23416
1D Compatibility (HY) -4800 + (ID) 1700
Total energy: -26067.0 ( -18.66 by residue)
QMean score : 0.398
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