Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEAIERRDDDMTIVSFEVEISAPIQEVFALLTTNTGLAKWFNELE------VGELGADGYLLFVMTP--E--EKITMPIRAFEPNQKLAFEWDQ-------------DEVAFELNEITANKTRLTFTEQLTTITEH----SPRDISGWHICLKKLQASAEGKIYDFNKTEFKTLFAKYQKELNIEK
2LDK Chain:A ((8-166))
--------DVEALSFSIVAEFDADVKRVWAIWEDPRQLERWWGPPTWPATFETHEFTVGGKAAYYMTGPDGTKARGWWQFTTIEAPDHLEFDDGFADEHGAPVDELGVTHATVKLEPLE-NRTRMTIISTFESEEQMQKMAEMGMEEGMREAIEQIDAVLSEPANALE-------------------
General information:
TITO was launched using:
RESULT:
Template:
2LDK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47366 for 891 contacts (-53.2/contact) +
2D Compatibility (PS) -13745 + (NN) 2605 + (LL) 2860
1D Compatibility (HY) -5200 + (ID) 1100
Total energy: -61946.0 ( -69.52 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_2LDK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LDK-query.scw
PDB file :
Tito_Scwrl_2LDK.pdb
: