Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFDDNKERVIQEYVPGKQVTLAHLIANPNRDIYTKLGLEEGASAIGILTITPSEASIIASDIATKSGDVRIGFID---RFSGSVVLTGDVSSVESALQQVVFSLHEILDFSIPKITRS
3SSQ Chain:A ((22-87))
------------------------------------------PIAVGMIETRGFPAVVEAADAMVKAARVTLVGYEKIGSGRVTVIVRGDVSEVQASVAAGVDSAKRV-----------
General information:
TITO was launched using:
RESULT:
Template:
3SSQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41793 for 457 contacts (-91.5/contact) +
2D Compatibility (PS) -6924 + (NN) -3497 + (LL) 3268
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -52496.0 ( -114.87 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_3SSQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SSQ-query.scw
PDB file :
Tito_Scwrl_3SSQ.pdb
: