Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------MKHTSKETKTKEAPMFIQMSIYAAILLVS--------------QMISMLLPKSLPIPTTVIGLVLMYVLLTAKIIKVEWVDSFGALMISMIGFMFVPSGISVAANLDILKAEGLQLVAVITISTVVMLVVV-----AYVARLILAIRELSVTDLFKKILPNHYSKKVEEK
1VZ0 Chain:A ((23-208))
VVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERRYRAALMAGLQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQLPPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEA
General information:
TITO was launched using:
RESULT:
Template:
1VZ0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113933 for 965 contacts (-118.1/contact) +
2D Compatibility (PS) -15733 + (NN) -6082 + (LL) 0
1D Compatibility (HY) 5200 + (ID) 950
Total energy: -131498.0 ( -136.27 by residue)
QMean score : 0.295
(partial model without unconserved sides chains):
PDB file :
Tito_1VZ0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VZ0-query.scw
PDB file :
Tito_Scwrl_1VZ0.pdb
: