Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVTVEKNRAVTFQANKELVSEAMTVLNKKNLTLSSALRLFLQNVVVTNEVDLLTEEELEKEKLFKQFQAEISKNIEDVRQGKFYTSEEVRAELGL
1U9P Chain:A ((14-59))
--WPGGGPQFNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGGGGREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRI----
General information:
TITO was launched using:
RESULT:
Template:
1U9P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13241 for 218 contacts (-60.7/contact) +
2D Compatibility (PS) -4937 + (NN) -3021 + (LL) 796
1D Compatibility (HY) -400 + (ID) 150
Total energy: -20953.0 ( -96.11 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_1U9P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U9P-query.scw
PDB file :
Tito_Scwrl_1U9P.pdb
: