Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------MIKTKFSDP----------LEQLAKKRKRKTLFKTVVLAL-ITVLLVVGIAFKGFTYLTSKNGQKTYHNF-------ELLSEIAYPN----ISYDSLYYQPSGQFTGKVHADRFKDIDGVQIPYSSFEENYSISGTFGTNADEKSEKNGLYDR---GTRQKVPQF------FNKNVKYKKGEAKTTPTNDLKYV----NKLNNDLIEI-------AITFDKS------------YSYKEIKTMIPNNIKQNWLWIGTSTELDTSYWPTKYQFGTDPETLNTPQIFIDKIKENLK-----GNSKVYFNNIN-----IYSDLEKYAKKYDKVNNSDKLKFSGIILTGKAENFKQLKEK----EWVHASSIGANIEY----------KPYYKLDKE------------------------------------------ |
| 2BMF Chain:A ((169-618)) | MASIEDNPEIEDDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGL-RTLILAPTRVVAAEMEEALRGLP-IRYQTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGI-FMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGEPLENDEDCAHWKEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLR------GEARKTFVDLMRRGDLPVWLAYRVAAEGINYADRRWCFDGVKNNQILEENVEVEIWTKEGERKKLKPRWLDARIYSDPLALKEFKEFAAGRK |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2BMF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 42459 for 2077 contacts (20.4/contact) +
2D Compatibility (PS) -31650 + (NN) -5656 + (LL) 600
1D Compatibility (HY) -8800 + (ID) 3150
Total energy: -6197.0 ( -2.98 by residue)
QMean score : 0.180
|
|
|