Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MALFSKKDKYIRISPNKALGSSDKRSLPEVPDELFAKCPSCKHMIYQKDLGLAKICPACSYNFRISAQERLLLTVDEDSFEELFTGIETKDPLNFPNYREKLAATRQKTNLDEAVVTGLAKIKGQTTALAIMDS-------------HFIMASMGTVVGEKLTRLFELATEKKLPIVIFTASGGARMQE-----GIMSLMQMAKVSAAVKRHSNQGLFYLTILTDPTTGGVTASFA---MEGDIILAEP--QALVGFAGRRVIETTVR-EDL---P-----------E---GFQKAEFLLEHGFVDAIINRTELRDCIAQLIAFHGNEVGHE |
| 3GF3 Chain:A ((312-565)) | ---------------------------------------------------LYSIIP-MNQKRPYDIYEVIARLFDNSEFSEYKKG------------------------YGPEMVTGLAKVNGLLVGVIANVQGLLMNYPEYKQNSVGIGGKLYRQGLIKMNEFVTLCARDRIPLIWLQDTTGIDVGDEAEKAELL--GLGQSL---IYSIENSKLPSLEITIRKASAAAHYVLGGPQGNNTNVFSIGTGACEYYVMPGETAANAMYSRKLVKA-QPIIGKMNDMIQMYTDKSRPKYCTEKGMVDEIVDMTEVRPYIQAFTEAAYQNPQSI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GF3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -142501 for 1602 contacts (-89.0/contact) +
2D Compatibility (PS) -22573 + (NN) -11174 + (LL) 4480
1D Compatibility (HY) -9600 + (ID) 1700
Total energy: -183068.0 ( -114.27 by residue)
QMean score : 0.431
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