Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKKIIAVDLDGTLLHNNNTISDYTADTLRKVQAQGHKVIITTGRPYRMALAHY-LRLDLKTPMINFNGALTHIPEKKWAFERSATIDKKLLLETLNLSDAIQADFIASEYRKNFYITMDN-R--DKINPQLFGV---NEI---TDKMALDVTKI--TRN--PNALLMQTRHKDKYELAKELRQHFNHELEVDSWGGPLNILEFSPKGVNKAYALKHLLKSLNLSQENLIAFGDEHNDTEMLAFAHTGYAMKNANPTLLPYADQQIQWTNEEDGVAKTLEKLLL |
| 3DNP Chain:A ((6-274)) | --KQLLALNIDGALLRSNGKIHQATKDAIEYVKKKGIYVTLVTNRHFRSA-QKIAKSLKLDAKLITHSGAYIAEKI-DAPFF-EKRISDDHTFNIVQVLESYQCN-IRL-LH-EKYSIGNKKKVNSNLLGKALIHPSDPIFYPVQFVESL--SDLLMDEPVSAPVIEVYTEHDIQHDITETITKAFP-AVDV-IRV-NDEKLNIVPKGVSKEAGLALVASELGLSMDDVVAIGHQYDDLPMIELAGLGVAMGNAVPEIKRKADWV-TRSNDEQGVAYMMKEYFR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DNP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -86970 for 2170 contacts (-40.1/contact) +
2D Compatibility (PS) -27750 + (NN) -13565 + (LL) 1016
1D Compatibility (HY) -13600 + (ID) 3000
Total energy: -143869.0 ( -66.30 by residue)
QMean score : 0.500
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