Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MTKEKMMSFMTIASIALLGSGVVCANDVAD-PVAGTTDVVVVPVSPQPTTPSEHTGTDTTNKIVDSTKPSEDKVADSTDQLIPPVKSDLETSEDKVTDPTETKPSKEKTEEPVKSN--DSEVIPEQPKSEEVKKAEENTGASTTETPKPVTKPVIETPIVTNTGYTVLGTQDGNVWVQTETGNVLKPAIAIGAVKQKDGTVALKTKDGKLEVLPSTGETKTILAILGGLAILGAIWVGWKENIKKYLTFLKKKSKK |
| 1KCF Chain:A ((3-256)) | TVKLSFLQHICKLTGLSRSGRKDELLRRIVDSPIYPTSRVLGIDL-----------GIKNFSYCFASQNEDSKVIIHNWSVENLTEKNGLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVILMERQRYRSGIATIPEWTLRVNMLESMLYALHYAEKRNYPFLLSLSPKSTYSYWASVLNK---KSRVQMVKELIDGQKILFENEEALYKWNNGSRVEF-KKDDMADSALIASGWMRWQAQLKHYRNFCKQFL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KCF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 52586 for 1845 contacts (28.5/contact) +
2D Compatibility (PS) -24453 + (NN) 1814 + (LL) 416
1D Compatibility (HY) -7200 + (ID) 1000
Total energy: 22163.0 ( 12.01 by residue)
QMean score : 0.106
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