Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNYRKLIVLLLLTFFVIFMGAYAYTHIVEKRSLTSNTIEKTLPVVNQIKPQTIKEYQNYLTKVAKRNVLPVDIPQALNNEKVEITATDGMQTFTWNDKNNPKQKVIFYVHGGSYIHQASELQYIFVNKLAKKLDAKVVFPIYPKAPTYNYSDAIPKIKKLYQNTLAS-----VTSPKQIILVGESAGGGLALGLADNLVTEHIKQPKEIILISPWLDIATNNPKIEKVQKKDPLLKAWQLQQVAPYWANGKKNFKNPQVSPLYSSQFNKMAPISFFIGTHDIFYPDNQLLHQKLAKENIKHHYIVGQKMNHVYPVLP--IPEAETAFKQMLKIINH |
3QH4 Chain:A ((68-309)) | -----------------------------------------------------------------------------------------PVPVRIYRAAP-TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPEHPYPAALHDAIEVLTWVVGNATRLGFD-ARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVLDDRPTAS-RSEFR-ATPAFDGEAASLMWRHYLA-GQ-TPSPESVPGRRGQLAGLPATLITCGEIDPFRDEVLDYAQRLLGAGVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALAD |
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General information:
TITO was launched using:
| RESULT:
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Template: 3QH4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -139294 for 2110 contacts (-66.0/contact) +
2D Compatibility (PS) -25368 + (NN) -14583 + (LL) 7768
1D Compatibility (HY) -2800 + (ID) 1900
Total energy: -176177.0 ( -83.50 by residue)
QMean score : 0.586
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