Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIRKLVVMSDSHGDRDIVKDIKNHYL--GKVDAIFHNGDSELPSSD-------------PIW----EGIHVVTGNCDYDSGY-----PE---VLVTKIDNTVIVQTHGHLHQINFTWDKLDLLAQQEDADICLYGHLHRADAWKNGKTIFINPGSVLQPRGPINEKLYAVVTITDSKVLVEYYTRQHQPYPNLTKEFSR
1SU1 Chain:A ((25-198))
--MMKLMFASDIHGSLPATERVLE-LFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGPEN-------LPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGN-PASYGMLDNDV----LSVIALNDQSIIAQVAINP-
General information:
TITO was launched using:
RESULT:
Template:
1SU1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64868 for 1143 contacts (-56.8/contact) +
2D Compatibility (PS) -16473 + (NN) -12255 + (LL) 1052
1D Compatibility (HY) -4400 + (ID) 1800
Total energy: -98744.0 ( -86.39 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_1SU1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SU1-query.scw
PDB file :
Tito_Scwrl_1SU1.pdb
: