Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKKMTINDIAQLSKTSKTTVSFFLNQKFEKMSDETRQRIQEVIDETGYRPSTIARSLNSKKTKLLGVLIGDITNTFSNQIVKGIEHITKQKGYQIIVGNSNYDAKSEEDYIENMLNLGVDGFIIQPTSNFRKYSRILKEKKKPMVFFDSQLYEHKTSWVKANNYDAVYDMTQECLNRGYKKFIMITADTSLLS-TRIERASGFMDALKDNGFGYDTLVIEDDDH----SKSDIEDFLKAVVPDKEETLVFAPNCWALPMVFTAMKNLNFDMPR-VGLVGFDNIEWTDFSSPKVSTIVQPAYEEGEQVAQILINRIEGDD-SVDNQQIVDCQMFWKESTF |
| 2HSG Chain:A ((2-332)) | ---NVTIYDVAREASVSMATVSRVVNGNPN-VKPSTRKKVLETIERLGYRPNAVARGLAS-KTTTVGVIIP--SNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLE-EPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEE---DEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVD-SSIVQLPHRIEFRQSTK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HSG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -114582 for 2660 contacts (-43.1/contact) +
2D Compatibility (PS) -34202 + (NN) -7317 + (LL) 1112
1D Compatibility (HY) -14400 + (ID) 4100
Total energy: -173489.0 ( -65.22 by residue)
QMean score : 0.454
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