Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADVKVVNNEDSRGQKQDLKAKLFHIKIGSVPLPVYVCLALLILLAGFLQKLPVNMLGGFAVILTMGWFLGTIGASIPGFKNFGGPAILSLLVPSILVFFNLINKNVLESTNMLMKQANFLYFYIACLVSGSILGMNRKMLIQGL---LRMIFPMLLGMVCAMMVGTFVGVILGLE-W-RHTLFYIVTPVLAGGIGEGILPLSLGYSSITGV-ASEQLVAQLIPATIIGNFFAILCTALLNRLGEKKPHLSGQGQLVRLNKGEDMSDIIADHSGPIDVKKMGGGVLTACSLFIFGHLLQQLTGFPGPVLMIVAAAILKYINVIPRET-------QNGAKQLYKFISGNFTFPL-MAGLGLLYIPLKDVVATLSIQYFIVVISVVFTVISVGFFVSRF---LNMN--PV----EAGII-SACQSGMGGTGDVAILSTADRMNLMPFAQVATRLGGAITVITMTAILRMLF |
| 1ZCD Chain:A ((64-349)) | ------------------------------------------------------------------------------------------------------------------------NDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGG-MIVPALLYLAFNYADPITREGWAI---PAATDIAFALGVLA----L-LGSRVPLALKIFLMALAIIDDLGAIIIIALFYTNDLS-MASLGVAAVAIAVLAVL--N-LCGARRTGVY--ILVG----VVL-WTA---VLKSGVHATLAGVIVGFF------IPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVS-LQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVG-ILCGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1ZCD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -225808 for 2064 contacts (-109.4/contact) +
2D Compatibility (PS) -25823 + (NN) 5746 + (LL) 11940
1D Compatibility (HY) -12800 + (ID) 2000
Total energy: -248745.0 ( -120.52 by residue)
QMean score : 0.154
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