Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKID----E-ESGNFGFDRLAELVKE-----YKVDKFVVGLPKNMN---NTS--GPRVEA--SQAYGDKITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVIDKLAAQLILQNYLDRMF
2QM1 Chain:A ((7-124))
-KIIGIDLGGTTIKFAILTTDGVVQQ-KWSIETNILEDGKHIVPSIIESIRHRIDLYNMKKEDFVGIGMGTPGSVDIEKGTVVGAYNLNWTTVQPVKEQIESALGIPFALDNDANVAALGERWKGAGENNPDVIFITLGTGVGGGIVAAGKLLHGV
General information:
TITO was launched using:
RESULT:
Template:
2QM1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17956 for 712 contacts (-25.2/contact) +
2D Compatibility (PS) -10634 + (NN) -872 + (LL) 36
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -34626.0 ( -48.63 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_2QM1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QM1-query.scw
PDB file :
Tito_Scwrl_2QM1.pdb
: