Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASVQSGKMIVGLDIGTSKVVALVGEVTADGQLEVVGIGTHPSRGLKKGVVVNIESTVQSIQRAIDEAQQMAGCRIHSAFVGIAGNHIRSLNSHGIVAIRDREVNPADIERVLD--AAQAVAIPADQRVLHTLAQDYVIDNQEGVREPLGMSGVRLEAKVHVVTCAVNASQNIEKCVRRCGLEVDDIILEQLASAYSVLT--EDEKELGVCLVDIGGGTTDIAIFTEGAIRHTAVIPIAGDQVTNDIAMALRTPTQYAEEIKIRYACALAKLAGAGETIKVPSVGDRPPRELSRQALAEVVEPRYDELFTLVQAELRRSGYE-DLIPAGIVLTGGTSKMEGAVELAEEIFHMPVRLGVPYSVKGL--------TDVVRNPIYSTGVGLLMYGLQKQSDGMSMSVSGSSYSSDEPKAPVLERLKRWVQGNF |
| 2YCH Chain:A ((11-375)) | -----PRVEALGLEIGASALKLVEVSGN-PPALKALASRPTPPGLLMEGMVAEPAALAQEIKELLLE----ARTRKRYVVTALSNLAVILR----PIQV--PKMPLKEMEEAVRWEAERYIPFPI-EVVLDFAPLTPLSEVQ-----------EGEQVQVMVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAVRVLTLSGKDFTEAIARSFNLDLLAAEEVKRTY-----------------------------GRIYDAIRPVLVELTQELRRSLEFFRIQL--SPEVGYLLGGGSKLRGLASLLTDTLGVNLEPVNPWEAVAVDPKRFESEQLQEIGPEFAVALGLALRGVEP----------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -217989 for 2656 contacts (-82.1/contact) +
2D Compatibility (PS) -34564 + (NN) -9481 + (LL) 4288
1D Compatibility (HY) -9200 + (ID) 3050
Total energy: -269996.0 ( -101.66 by residue)
QMean score : 0.501
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