Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLRSVIAADHPALFALWSRTPGIRLRAEDAYPFFLAY-LQRNPGLSLLVETEGEVIACLMAGHD---GRRGYLQHLVVDPGYRGLGLARRMLDEVLARLAREGIGKSHVFVLDAAEEAQAFWRAQSDWERRKDIQVFSTREGHA
1MK4 Chain:A ((1-129))
MDIRTITSSDYEMVTSVLNEWWGGRQ-L--K-EKLPRLFFEHFQDTSFITSEHNSMTGFLIGFQSQSDPETAYIHFSGVHPDFRKMQIGKQLYDVFIETVKQRGCTRVKCVTSPVNKVSIAYHTKL-GFDIEKG-----------
General information:
TITO was launched using:
RESULT:
Template:
1MK4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88780 for 842 contacts (-105.4/contact) +
2D Compatibility (PS) -13901 + (NN) -8806 + (LL) 1084
1D Compatibility (HY) -6800 + (ID) 750
Total energy: -117953.0 ( -140.09 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_1MK4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MK4-query.scw
PDB file :
Tito_Scwrl_1MK4.pdb
: