Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGIIGAMEEEVTILKNKLTQ-LSEISVAHVKFYTGILKDREVVITQSGIGKVNAAISTTLLINKFKPDVIINTGSAGALDESLNVGDVLISDDVKYHDADATAFGYEYGQIPQMPVAFQSSKPLIEKVSQVVQQQQLTAKVGLIVSGDSFIGSVEQRQKIKKAFPNAMAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVEALVSQL
3NM6 Chain:B ((3-230))
KIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERKEFLVSEF-KASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL
General information:
TITO was launched using:
RESULT:
Template:
3NM6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133863 for 2039 contacts (-65.7/contact) +
2D Compatibility (PS) -24780 + (NN) -11284 + (LL) -140
1D Compatibility (HY) -18000 + (ID) 3950
Total energy: -192017.0 ( -94.17 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_3NM6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NM6-query.scw
PDB file :
Tito_Scwrl_3NM6.pdb
: