Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERPQLDSMSQDLSEALKEATKEVHIRAENSEFMRNFQKGQVSREGFKLVMASLYHIYTALEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEAIPYTPATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVLKKIAQKAMALPSSGEGLAFFTFPSIDNPTKFKQLYRARMNTLEMTPEVKHRVTEEAKTAFLLNIELFEELQALLTEEHKDQSPSQTEFLRQRPASLVQDTTSAETPRGKSQISTSSSQTPLLRWVLTLSFLLATVAVGIYAM
1TWR Chain:B ((10-223))
---------PQDLSEALKEATKEVHTQAENAEFMRNFQKGQVTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTH------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1TWR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101729 for 1660 contacts (-61.3/contact) +
2D Compatibility (PS) -23901 + (NN) -19649 + (LL) 5380
1D Compatibility (HY) -27200 + (ID) 9000
Total energy: -176099.0 ( -106.08 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_1TWR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TWR-query.scw
PDB file :
Tito_Scwrl_1TWR.pdb
: