Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSNSRKK
4FVL Chain:A ((1-169))
YNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSS-KGYNLFLVAAHAFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYGPGDED---
General information:
TITO was launched using:
RESULT:
Template:
4FVL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75652 for 1279 contacts (-59.1/contact) +
2D Compatibility (PS) -18725 + (NN) -16689 + (LL) 200
1D Compatibility (HY) -15600 + (ID) 4150
Total energy: -130616.0 ( -102.12 by residue)
QMean score : 0.806
(partial model without unconserved sides chains):
PDB file :
Tito_4FVL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FVL-query.scw
PDB file :
Tito_Scwrl_4FVL.pdb
: