Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLPTAQEVQGLMARYIELVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGLGGGKVRACLTGPVRASHNGCGAMPFRVEMVWNGQPCALDVIDVMRFDEHGRIQTMQAYWSEVNLSVREPQ
3IPT Chain:D ((2-127))
-NLPTAQEVQGLMARSIELVDVGDIEAIVQMYADDATVENPFGQPPIHGREQIAAFYRQGL---KVRACLTGPVRASHNGCGAMPFRVEMVWNGQPCALDVIDVMRFDEHGRIQTMQAYWSEVNLSV----
General information:
TITO was launched using:
RESULT:
Template:
3IPT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81489 for 903 contacts (-90.2/contact) +
2D Compatibility (PS) -13608 + (NN) -4446 + (LL) -124
1D Compatibility (HY) -17600 + (ID) 6050
Total energy: -123317.0 ( -136.56 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_3IPT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IPT-query.scw
PDB file :
Tito_Scwrl_3IPT.pdb
: