Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
IDCGHVDSLVRPCLSYVQG---G-P------------GPSGQCCDGVKNLHNQARSQSDRQSACNC--LRGIARGIH--N-LN-------EDNARGTPLKCGVNLPYTISLNIDCSRV
1SM7 Chain:A ((13-101))
-------QHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------DQV--CVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28228 for 388 contacts (-72.8/contact) +
2D Compatibility (PS) -6283 + (NN) 123 + (LL) 1544
1D Compatibility (HY) -2400 + (ID) 750
Total energy: -35994.0 ( -92.77 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: