Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTCGDVTSAIAPCMSYATGQ--AS-------------------SPSAGCCSGVRTLNGKASTSADRQAACRCLKNLAGSFK------GI----SMGNVANIPGECGVSVSFPINNNVNCDTLH
1PSY Chain:A ((25-122))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQT--------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38543 for 490 contacts (-78.7/contact) +
2D Compatibility (PS) -6686 + (NN) -848 + (LL) 984
1D Compatibility (HY) -2800 + (ID) 650
Total energy: -48543.0 ( -99.07 by residue)
QMean score : 0.293
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: