Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVANCGQVVSYLAPCISYAMGRV---S------------VPGGGCCSGVRGLNAAAATPADRKTTCTCLKQQASGMG--G-IK-------PNLVAGIPGKCGVNIPYAISPRTDCSKVR
1SM7 Chain:A ((13-101))
---------QHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46218 for 420 contacts (-110.0/contact) +
2D Compatibility (PS) -6345 + (NN) 1634 + (LL) 2072
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -51507.0 ( -122.64 by residue)
QMean score : 0.126
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: