Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTCGDVDASLLPCVAYLTGK------AAAP-----------SGDCCAGVRHLRTLPVGTAERRFACDCVKKAAARFK----GLN-----GDAIRDLPAKCAAPLPFPLSLDFDCNTIP
1W2Q Chain:A ((23-114))
--------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME------NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAP-------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32534 for 397 contacts (-81.9/contact) +
2D Compatibility (PS) -6499 + (NN) -842 + (LL) 860
1D Compatibility (HY) -2400 + (ID) 500
Total energy: -41915.0 ( -105.58 by residue)
QMean score : 0.287
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: