Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LMSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGP---GLN-----TARAAGLPSACKVNIPYKISASTNCNTVR
3OB4 Chain:A ((428-485))
------------------------QERCCNELNEFE------NNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP-------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12980 for 266 contacts (-48.8/contact) +
2D Compatibility (PS) -5566 + (NN) -3407 + (LL) 2220
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -22283.0 ( -83.77 by residue)
QMean score : 0.250
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: