Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AAPSSAQGTTTPADASGAVPSCASKLV------TCAGYL------NTTDTPP-------ESCCDPLKEAATTQAACMCAILMNKAALQAFGVAPEQGVL----LAKRCGVTNDASTCAK
1S6D Chain:A ((1-103))
-----------PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQ--PCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42198 for 472 contacts (-89.4/contact) +
2D Compatibility (PS) -8427 + (NN) -7406 + (LL) 704
1D Compatibility (HY) -5200 + (ID) 900
Total energy: -63427.0 ( -134.38 by residue)
QMean score : 0.362
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: