Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------APAGTTCEQLESVAR-SCTGYLKRSLIFLNDACCDGAESVYDALTTDAAVDLGFVCRCLRGFVISESLRPYLYRVANLPRLCRFKDRGPIPYNNSTIHDCRFSG-----TTRHSL
1IM3 Chain:D ((1-95))
PWFQIEDNRCYIDNG----KL--FARGSIVGNMSR---FVFDPKAD-----YGGVGENLYVHADDV-----EFVPGESLK---WNVRNL---------DVMPIFETLALRLVLQGDVIWLRCVPEL
General information:
TITO was launched using:
RESULT:
Template:
1IM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34009 for 472 contacts (-72.1/contact) +
2D Compatibility (PS) -8214 + (NN) 322 + (LL) 2060
1D Compatibility (HY) -5600 + (ID) 1200
Total energy: -46641.0 ( -98.82 by residue)
QMean score : 0.165
(partial model without unconserved sides chains):
PDB file :
Tito_1IM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IM3-query.scw
PDB file :
Tito_Scwrl_1IM3.pdb
: