Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTCDDVNNNLISCLSYVAG----GGK------VPTSCCSGVKNLLSLAKTRNDRQTACSCLKSLAVEAN---N---------D---------QLKRAQTVPKSCSLTIPFPISRDVDCSKVK
1B1U Chain:A ((14-109))
------HNPLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI--------PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIH------------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36373 for 408 contacts (-89.1/contact) +
2D Compatibility (PS) -6422 + (NN) -743 + (LL) 1452
1D Compatibility (HY) -3200 + (ID) 650
Total energy: -45936.0 ( -112.59 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: