Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APYTEALSCGQVSSSLAPCISYLTK---G-G---A---------------VPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSIS--G-V-------NAGNAASFPGKCGVSIPYKISPSTDCSKVQ
1PSY Chain:A ((25-119))
-------------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCM-------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36276 for 487 contacts (-74.5/contact) +
2D Compatibility (PS) -6008 + (NN) 140 + (LL) 1464
1D Compatibility (HY) -4000 + (ID) 800
Total energy: -45480.0 ( -93.39 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: