Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVPCSTVDMKAAACVGFATGKDSKPSSACCTGLQQLAQTVKSVDDKKAICRCLKASSKSL-----GIK-----DQFLSKIPAACNIKVGFPVSTATNCETIH
3OB4 Chain:A ((429-485))
--------------------------ERCCNELNEFE------NNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP-------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15702 for 251 contacts (-62.6/contact) +
2D Compatibility (PS) -4689 + (NN) -1502 + (LL) 2560
1D Compatibility (HY) -2400 + (ID) 450
Total energy: -22183.0 ( -88.38 by residue)
QMean score : 0.351
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: