Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------ATC-----SVTELMPCSSAFT--SSAAPT-----------AQCCTKLKE-QSPCLCGYLK----NPTLKQYITN--PNAKKVTSTCGVPIPNC--
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQPCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26874 for 401 contacts (-67.0/contact) +
2D Compatibility (PS) -6566 + (NN) -1594 + (LL) 0
1D Compatibility (HY) -4800 + (ID) 650
Total energy: -40484.0 ( -100.96 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: