Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GGVVEIC----NVSKDDLMPCKPAVT---QPPAQPV---QACCSVLSTANLTCFCE----FGNNYPSLLRMF-GID----PDLAKALPGECKLNSPPGC-----------------
1HSS Chain:A ((5-124))
-----MCYPGQAFQVPALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHISEWCRCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITAVCRLPIVVDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40142 for 431 contacts (-93.1/contact) +
2D Compatibility (PS) -7397 + (NN) -2195 + (LL) 144
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -53490.0 ( -124.11 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: