Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSVCNVPISGLMACKPAVT----PP-NPSA-------PTSACCSALTHADMRCLCSYKNSNVLP------SL-G----IDPNLALQLPPKCKLPRPNC
2LVF Chain:A ((16-105))
--------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRC
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17263 for 381 contacts (-45.3/contact) +
2D Compatibility (PS) -7053 + (NN) -3925 + (LL) 516
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -30925.0 ( -81.17 by residue)
QMean score : 0.372
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: