Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------------QSICNVSISGLTSCSPAVTPPNP----APPTSACCSALSHADLRCLC-SYKNSTLLPSLGIDQKLPLK----LPEKCRLPHRAPC--
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNL-MSQPCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35010 for 472 contacts (-74.2/contact) +
2D Compatibility (PS) -7483 + (NN) -2847 + (LL) -140
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -49080.0 ( -103.98 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: