Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------QDEECLAGIGN--LISCDPYV---------------IPGANQGSPS----KECCSALGGVKQSCYCTAIDIISN----------------------LPARCSLPAVNCA---
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37390 for 467 contacts (-80.1/contact) +
2D Compatibility (PS) -6733 + (NN) -808 + (LL) 0
1D Compatibility (HY) -6400 + (ID) 800
Total energy: -52131.0 ( -111.63 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: