Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGATPPDRMALKLAPCASAAQNPSS---------------APSNGCCTAVHTIGKQSPQCLCAVMLSKTA----K-KSG-----IKPEVAITIPKRCNLVDRPVGYKCGDYTLP
1SM7 Chain:A ((14-100))
--------------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ-------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43092 for 395 contacts (-109.1/contact) +
2D Compatibility (PS) -6190 + (NN) -662 + (LL) 564
1D Compatibility (HY) -2800 + (ID) 550
Total energy: -52730.0 ( -133.49 by residue)
QMean score : 0.230
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: